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The application of DNA sequence data for the identification of benthic nematodes from the North Sea
Vogt, P.; Miljutina, M.; Raupach, M.J. (2014). The application of DNA sequence data for the identification of benthic nematodes from the North Sea. Helgol. Mar. Res. 68(4): 549-558. https://dx.doi.org/10.1007/s10152-014-0411-6
In: Helgoland Marine Research. Springer: Berlin; Heidelberg. ISSN 1438-387X; e-ISSN 1438-3888
Peer reviewed article  

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Trefwoorden
    Sabatieria de Rouville, 1903 [WoRMS]
    Marien/Kust
Author keywords
    28S rDNA: D2–D3; Molecular operational taxonomic units; Molecular species identification; Sabatieria; Wadden Sea

Auteurs  Top 
  • Vogt, P.
  • Miljutina, M.
  • Raupach, M.J.

Abstract
    Nematodes or roundworms represent one of the most diverse and dominant taxon in marine benthic habitats. Whereas a morphological identification of many species is challenging, the application of molecular markers represents a promising approach for species discrimination and identification. In this study, we used an integrative taxonomic approach, combining both molecular and morphological methods, to characterize nematodes of distinct sex and ontogenetic stages from three sampling sites of the North Sea. Morphospecies were discriminated after first visual determination, followed by a molecular analysis of the nuclear 28S rDNA: D2–D3 marker. By linking each sequence to a morphological voucher, discordant morphological identification was subjected to a so-called reverse taxonomic approach. Molecular operational taxonomic units (MOTUs) and morphospecies were compared for all of the three sampling sites to assess concordance of methodology. In total, 32 MOTUs and 26 morphospecies were assigned, of which 12 taxa were identified as described species. Both approaches showed high concordance in taxon assignment (84.4 %) except for a cluster comprising various Sabatieria species. Our study revealed the high potential of the analyzed fragment as a useful molecular marker for the identification of the North Sea nematodes and highlighted the applicability of this combined taxonomic approach in general.

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