Open WL Archief (OWA)

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Het OWA, het open archief van het Waterbouwkundig Laboratorium heeft tot doel alle vrij toegankelijke onderzoeksresultaten van dit instituut in digitale vorm aan te bieden. Op die manier wil het de zichtbaarheid, verspreiding en gebruik van deze onderzoeksresultaten, alsook de wetenschappelijke communicatie maximaal bevorderen.

Dit archief wordt uitgebouwd en beheerd volgens de principes van de Open Access Movement, en het daaruit ontstane Open Archives Initiative.

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Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards ten Hoopen, A.; Pesant, S.; Kottmann, R.; Kopf, A.; Bicak, M.; Claus, S.; Deneudt, K.; Borremans, C.; Thijssen, P.; Dekeyzer, S.; Schaap, D.M.A.; Bowler, C.; Glóckner, F.O.; Cochrane, G. (2015). Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards. Stand Genomic Sci. 10: 20 [1-10]. https://dx.doi.org/10.1186/s40793-015-0001-5 In: Standards in Genomic Sciences. BioMed Central: London. e-ISSN 1944-3277, meer

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Beschikbaar in	Auteurs | Dataset
VLIZ: Open access 271229 [ download pdf ]

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Trefwoorden

Biodiversity Bioinformatics Interoperability Reporting Marien/Kust

Author keywords

Data standard; Molecular; Microbial

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Auteurs		Top | Dataset
ten Hoopen, A. Pesant, S., meer Kottmann, R., meer Kopf, A. Bicak, M.	Claus, S., meer Deneudt, K., meer Borremans, C. Thijssen, P. Dekeyzer, S., meer	Schaap, D.M.A., meer Bowler, C. Glóckner, F.O., meer Cochrane, G.

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Abstract

Contextual data collected concurrently with molecular samples are critical to the use of metagenomics in the fields of marine biodiversity, bioinformatics and biotechnology. We present here Marine Microbial Biodiversity, Bioinformatics and Biotechnology (M2B3) standards for “Reporting” and “Serving” data. The M2B3 Reporting Standard (1) describes minimal mandatory and recommended contextual information for a marine microbial sample obtained in the epipelagic zone, (2) includes meaningful information for researchers in the oceanographic, biodiversity and molecular disciplines, and (3) can easily be adopted by any marine laboratory with minimum sampling resources. The M2B3 Service Standard defines a software interface through which these data can be discovered and explored in data repositories. The M2B3 Standards were developed by the European project Micro B3, funded under 7th Framework Programme “Ocean of Tomorrow”, and were first used with the Ocean Sampling Day initiative. We believe that these standards have value in broader marine science.

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Dataset

OSD2014: Participants of Ocean Sampling Day 2014: Registry of samples and environmental measurements from 2014. https://doi.pangaea.de/10.1594/PANGAEA.854419, meer

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