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Het OWA, het open archief van het Waterbouwkundig Laboratorium heeft tot doel alle vrij toegankelijke onderzoeksresultaten van dit instituut in digitale vorm aan te bieden. Op die manier wil het de zichtbaarheid, verspreiding en gebruik van deze onderzoeksresultaten, alsook de wetenschappelijke communicatie maximaal bevorderen.

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prof. dr. Herndl, Gerhard

ORCID ResearcherID

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Instituut	Top | Instituut | Publicaties
Koninklijk Nederlands Instituut voor Onderzoek der Zee (NIOZ), meer Functie: Wetenschapper Contact op het instituut: Tel.: +31-(0)222-369 35 07 E-mail:

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Publicaties (130)	Top | Instituut | Publicaties
A1 publicaties (121) [show]
Chen, S.; Xie, Z.-X.; Yan, K.-Q.; Chen, J.-W.; Li, D.-X.; Wu, P.-F.; Peng, L.; Lin, L.; Dong, C.-M.; Zhao, Z.; Fan, G.-Y.; Liu, S.-Q.; Herndl, G.; Wang, D.-Z. (2024). Functional vertical connectivity of microbial communities in the ocean. Science Advances 10(21): eadj8184. https://dx.doi.org/10.1126/sciadv.adj8184, meer Fadeev, E.; Hennenfeind, J.H.; Amano, C.; Zhao, Z.; Klun, K.; Herndl, G.; Tinta, T. (2024). Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter. Appl. Environ. Microbiol. 9(2). https://dx.doi.org/10.1128/msystems.01264-23, meer Masdeu-Navarro, M.; Mangot, J.-F.; Xue, L.; Cabrera-Brufau, M.; Kieber, D.J.; Rodriguez-Ros, P.; Gardner, S.G.; Bergauer, K.; Herndl, G.; Marrasé, C.; Simó, R. (2024). Diel variation of seawater volatile organic compounds, DMSP-related compounds, and microbial plankton inside and outside a tropical coral reef ecosystem. Front. Mar. Sci. 11: 1341619. https://dx.doi.org/10.3389/fmars.2024.1341619, meer Orel, N.; Fadeev, E.; Herndl, G.J.; Turk, V.; Tinta, T. (2024). Recovering high-quality bacterial genomes from cross-contaminated cultures: a case study of marine Vibrio campbellii. BMC Genom. 25(1). https://dx.doi.org/10.1186/s12864-024-10062-2, meer Salazar Alekseyeva, K.; Herndl, G.; Baltar, F. (2024). Influence of salinity on the extracellular enzymatic activities of marine pelagic fungi. Journal of Fungi 10(2): 152. https://dx.doi.org/10.3390/jof10020152, meer Zhao, Z.; Amano, C.; Reinthaler, T.; Orellana, M.V.; Herndl, G. (2024). Substrate uptake patterns shape niche separation in marine prokaryotic microbiome. Science Advances 10(20): eadn5143. https://dx.doi.org/10.1126/sciadv.adn5143, meer Zhao, Z.; Baltar, F.; Herndl, G. (2024). Decoupling between the genetic potential and the metabolic regulation and expression in microbial organic matter cleavage across microbiomes. Environ. Microbiol. 12(5). https://dx.doi.org/10.1128/spectrum.03036-23, meer Amano, C.; Reinthaler, T.; Sintes, E.; Varela, M.M.; Stefanschitz, J.; Kaneko, S.; Nakano, Y.; Borchert, W.; Herndl, G.J.; Utsumi, M. (2023). A device for assessing microbial activity under ambient hydrostatic pressure: The in situ microbial incubator (ISMI). Limnol. Oceanogr., Methods 21(2): 69-81. https://dx.doi.org/10.1002/lom3.10528, meer Baltar, F.; Martínez-Pérez, C.; Amano, C.; Vial, M.; Robaina-Estévez, S.; Reinthaler, T.; Herndl, G.; Zhao, Z.; Logares, R.; Morales, S.E.; González, J.M. (2023). A ubiquitous gammaproteobacterial clade dominates expression of sulfur oxidation genes across the mesopelagic ocean. Nature Microbiology 8(6): 1137-1148. https://dx.doi.org/10.1038/s41564-023-01374-2, meer Debeljak, P.; Bayer, B.; Sun, Y.; Herndl, G.J.; Obernosterer, I. (2023). Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean. Microbiome 11(1): 187. https://dx.doi.org/10.1186/s40168-023-01600-3, meer Herndl, G.J.; Bayer, B.; Baltar, F.; Reinthaler, T. (2023). Prokaryotic life in the deep ocean's water column. Ann. Rev. Mar. Sci. 15: 461-483. https://dx.doi.org/10.1146/annurev-marine-032122-115655, meer Salazar Alekseyeva, K.; Herndl, G.; Baltar, F. (2023). Release of cell-free enzymes by marine pelagic fungal strains. Fungal Biol. 4: 1209265. https://dx.doi.org/10.3389/ffunb.2023.1209265, meer Srivastava, A.; De Corte, D.; Garcia, J.A.L.; Swan, B.K.; Stepanauskas, R.; Herndl, G.; Sintes, E. (2023). Interplay between autotrophic and heterotrophic prokaryotic metabolism in the bathypelagic realm revealed by metatranscriptomic analyses. Environmental Microbiome 11(1): 239. https://dx.doi.org/10.1186/s40168-023-01688-7, meer Tinta, T.; Zhao, Z.; Bayer, B.; Herndl, G. (2023). Jellyfish detritus supports niche partitioning and metabolic interactions among pelagic marine bacteria. Environmental Microbiome 11(1). https://dx.doi.org/10.1186/s40168-023-01598-8, meer Amano, C.; Zhao, Z.; Sintes, E.; Reinthaler, T.; Stefanschitz, J.; Kisadur, M.; Utsumi, M.; Herndl, G.J. (2022). Limited carbon cycling due to high-pressure effects on the deep-sea microbiome. Nature Geoscience 15(12): 1041-1047. https://dx.doi.org/10.1038/s41561-022-01081-3, meer Breyer, E.; Zhao, Z.; Herndl, G.J.; Baltar, F. (2022). Global contribution of pelagic fungi to protein degradation in the ocean. Microbiome 10(1): 143. https://dx.doi.org/10.1186/s40168-022-01329-5, meer Korlevic, M.; Markovski, M.; Herndl, G.J.; Najdek, M. (2022). Temporal variation in the prokaryotic community of a nearshore marine environment. NPG Scientific Reports 12(1): 16859. https://dx.doi.org/10.1038/s41598-022-20954-6, meer Malfertheiner, L.; Martínez-Pérez, C.; Zhao, Z.; Herndl, G.J.; Baltar, F. (2022). Phylogeny and metabolic potential of the candidate phylum SAR324. Biology-Basel 11(4): 599. https://dx.doi.org/10.3390/biology11040599, meer Markovski, M.; Najdek, M.; Herndl, G.J.; Korlevic, M. (2022). Compositional stability of sediment microbial communities during a seagrass meadow decline. Front. Mar. Sci. 9: e966070. https://dx.doi.org/10.3389/fmars.2022.966070, meer Martínez-Pérez, C.; Greening, C.; Bay, S.K.; Lappan, R.J.; Zhao, Z.; De Corte, D.; Hulbe, C.; Ohneiser, C.; Stevens, C.; Thomson, B.; Stepanauskas, R.; González, J.M.; Logares, R.; Herndl, G.J.; Morales, S.E.; Baltar, F. (2022). Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf. Nature Comm. 13(1): 117. https://dx.doi.org/10.1038/s41467-021-27769-5, meer Martínez-Pérez, C.; Greening, C.; Bay, S.K.; Lappan, R.J.; Zhao, Z.; De Corte, D.; Hulbe, C.; Ohneiser, C.; Stevens, C.; Thomson, B.; Stepanauskas, R.; González, J.M.; Logares, R.; Herndl, G.J.; Morales, S.E.; Baltar, F. (2022). Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf. Nature Comm. 13(1): 117. https://dx.doi.org/10.1038/s41467-021-27769-5, meer Munson-McGee, J.H.; Lindsay, M.R.; Sintes, E.; Brown, J.M.; D’Angelo, T.; Brown, J.; Lubelczyk, L.C.; Tomko, P.; Emerson, D.; Orcutt, B.N.; Poulton, N.J.; Herndl, G.J.; Stepanauskas, R. (2022). Decoupling of respiration rates and abundance in marine prokaryoplankton. Nature (Lond.) 712(7941): 764-770. https://dx.doi.org/10.1038/s41586-022-05505-3, meer Pinto, M.; Zhao, Z.; Klun, K.; Libowitzky, E.; Herndl, G.J. (2022). Microbial consortiums of putative degraders of low-density polyethylene-associated compounds in the ocean. mSystems 7(2): e01415-21. https://dx.doi.org/10.1128/msystems.01415-21, meer Salazar Alekseyeva, K.; Herndl, G.J.; Baltar, F. (2022). Extracellular enzymatic activities of oceanic pelagic fungal strains and the influence of temperature. Journal of Fungi 8(6): 571. https://dx.doi.org/10.3390/jof8060571, meer Baltar, F.; Alvarez-Salgado, X.A.; Aristegui, J.; Benner, R.; Hansell, D.A.; Herndl, G.J.; Lønborg, C. (2021). What is refractory organic matter in the ocean? Front. Mar. Sci. 8: 642637. https://doi.org/10.3389/fmars.2021.642637, meer Baltar, F.; Zhao, Z.; Herndl, G.J. (2021). Potential and expression of carbohydrate utilization by marine fungi in the global ocean. Microbiome 9: 106. https://doi.org/10.1186/s40168-021-01063-4, meer Braun, A.; Spona-Friedl, M.; Avramov, M.; Elsner, M.; Baltar, F.; Reinthaler, T.; Herndl, G.J.; Griebler, C. (2021). Reviews and syntheses: Heterotrophic fixation of inorganic carbon – significant but invisible flux in environmental carbon cycling. Biogeosciences 18(12): 3689-3700. https://dx.doi.org/10.5194/bg-18-3689-2021, meer De Corte, D.; Muck, S.; Tiroch, J.; Mena, C.; Herndl, G.J.; Sintes, E. (2021). Microbes mediating the sulfur cycle in the Atlantic Ocean and their link to chemolithoautotrophy. Environ. Microbiol. 23(11): 7152-7167. https://dx.doi.org/10.1111/1462-2920.15759, meer Glatzel, T.; Herndl, G. (2021). Recognizing the complexity of soil organic carbon dynamics in vegetated coastal habitats. Glob. Chang. Biol. 27(1): 3-4. https://doi.org/10.1111/gcb.15426, meer Jiao, N.; Liu, J.; Edwards, B.; Lv, Z.; Cai, R.; Liu, Y.; Xiao, X.; Wang, J.; Jiao, F.; Wang, R.; Huang, X.; Guo, B.; Sun, J.; Zhang, R.; Zhang, Y.; Tang, K.; Zheng, Q.; Azam, F.; Batt, J.; Cai, W.-J.; He, C.; Herndl, G.J.; Hill, P.; Hutchins, D.; LaRoche, J.; Lewis, M.; MacIntyre, H.; Polimene, L.; Robinson, C.; Shi, Q.; Suttle, C.A.; Thomas, H.; Wallace, D.; Legendre, L. (2021). Correcting a major error in assessing organic carbon pollution in natural waters. Science Advances 7(16): eabc7318. https://doi.org/10.1126/sciadv.abc7318, meer Korlevic, M.; Markovski, M.; Zhao, Z.; Herndl, G.; Najdek, M. (2021). Seasonal dynamics of epiphytic microbial communities on marine macrophyte surfaces. Front. Microbiol. 12: 671342. https://dx.doi.org/10.3389/fmicb.2021.671342, meer Korlevic, M.; Markovski, M.; Zhao, Z.; Herndl, G.; Najdek, M. (2021). Selective DNA and protein isolation from marine macrophyte surfaces. Front. Microbiol. 12: 665999. https://dx.doi.org/10.3389/fmicb.2021.665999, meer Salazar Alekseyeva, K.; Mähnert, B.; Berthiller, F.; Breyer, E.; Herndl, G.J.; Baltar, F. (2021). Adapting an ergosterol extraction method with marine yeasts for the quantification of oceanic fungal biomass. Journal of Fungi 7(9): 690. https://doi.org/10.3390/jof7090690, meer Srivastava, A.; Saavedra, D.E.M.; Thomson, B.; Garcia, J.A.L.; Zhao, Z.; Patrick, W.M.; Herndl, G.J.; Baltar, F. (2021). Enzyme promiscuity in natural environments: alkaline phosphatase in the ocean. ISME J. 15: 3375-3383. https://doi.org/10.1038/s41396-021-01013-w, meer Tinta, T.; Klun, K.; Herndl, G.J. (2021). The importance of jellyfish–microbe interactions for biogeochemical cycles in the ocean. Limnol. Oceanogr. 66(5): 2011-2032. https://doi.org/10.1002/lno.11741, meer Bellou, N.; Garcia, J.A.L.; Colijn, F.; Herndl, G.J. (2020). Seasonality combined with the orientation of surfaces influences the microbial community structure of biofilms in the deep Mediterranean Sea. Deep-Sea Res., Part II, Top. Stud. Oceanogr. 171: 104703. https://dx.doi.org/10.1016/j.dsr2.2019.104703, meer Chen; Becraft; Pachiadaki, M.; Brown, J.M.; Jarett, J.K.; Gasol, J.M.; Ravin, N.V.; Moser, D.P.; Nunoura, T.; Herndl, G.J.; Woyke, T.; Stepanauskas, R. (2020). Hiding in plain sight: The globally distributed bacterial candidate phylum PAUC34f. Front. Microbiol. 11: article 376. https://dx.doi.org/10.3389/fmicb.2020.00376, meer Clifford, E.L.; De Corte, D.; Amano, C.; Paliaga, P.; Ivancic, I.; Ortiz, V.; Najdek, M.; Herndl, G.J.; Sintes, E. (2020). Mesozooplankton taurine production and prokaryotic uptake in the northern Adriatic Sea. Limnol. Oceanogr. 65(11): 2730-2747. https://dx.doi.org/10.1002/lno.11544, meer Mooshammer, M.; Alves, R.J.E.; Bayer, B.; Melcher, M.; Stieglmeier, M.; Jochum, L.; Rittmann, S.K.-M. R.; Watzka, M.; Schleper, C.; Herndl, G.J.; Wanek, W. (2020). Nitrogen isotope fractionation during archaeal ammonia oxidation: Coupled estimates from measurements of residual ammonium and accumulated nitrite. Front. Microbiol. 11: article 1710. https://dx.doi.org/10.3389/fmicb.2020.01710, meer Najdek, M.; Korlevic, M.; Paliaga, P.; Markovski, M.; Ivancic, I.; Ivesa, L.; Felja, I.; Herndl, G.J. (2020). Dynamics of environmental conditions during the decline of a Cymodocea nodosa meadow. Biogeosciences 17(12): 3299-3315. https://dx.doi.org/10.5194/bg-17-3299-2020, meer Najdek, M.; Korlevic, M.; Paliaga, P.; Markovski, M.; Ivancic, I.; Ivesa, L.; Felja, I.; Herndl, G.J. (2020). Effects of the invasion of Caulerpa cylindracea in a Cymodocea nodosa meadow in the northern Adriatic Sea. Front. Mar. Sci. 23: 602005. https://doi.org/10.3389/fmars.2020.602055, meer Pinto, M.; Polania Zenner, P.; Langer, T.M.; Harrison, J.; Simon, M.; Varela, M.M.; Herndl, G.J. (2020). Putative degraders of low‐density polyethylene‐derived compounds are ubiquitous members of plastic‐associated bacterial communities in the marine environment. Environ. Microbiol. 22(11): 4779-4793. https://doi.org/10.1111/1462-2920.15232, meer Steiner, P.A.; Geijo, J.; Fadeev, E.; Obiol, A.; Sintes, E.; Rattei, T.; Herndl, G.J. (2020). Functional seasonality of free-living and particle-associated prokaryotic communities in the coastal Adriatic Sea. Front. Microbiol. 11: 584222. https://doi.org/10.3389/fmicb.2020.584222, meer Thomson, B.; Wenley, J.; Lockwood, S.; Twigg, I.; Currie, K.; Herndl, G.J.; Hepburn, C.D.; Baltar, F. (2020). Relative importance of phosphodiesterase vs. phosphomonoesterase (alkaline phosphatase) activities for dissolved organic phosphorus hydrolysis in epi- and mesopelagic waters. Front. Earth Sci. 8: 560893. https://doi.org/10.3389/feart.2020.560893, meer Tinta, T.; Zhao, Z.; Escobar, A.; Klun, K.; Bayer, B.; Amano, C.; Bamonti, L.; Herndl, G.J. (2020). Microbial processing of jellyfish detritus in the ocean. Front. Microbiol. 11: 590995. https://doi.org/10.3389/fmicb.2020.590995, meer Weinbauer, M.; Griebler, C.; van Aken, H.M.; Herndl, G. (2020). Viral infection of prokaryotic plankton during early formation of the North Atlantic Deep Water. Aquat. Microb. Ecol. 84: 175-189. https://dx.doi.org/10.3354/ame01934, meer Zhang, Y.; Qin, W.; Hou, L.; Zakem, E.J.; Wan, X.; Zhao, Z.; Liu, L.; Hunt, K.A.; Jiao, N.; Kao, S.-J.; Tang, K.; Xie, X.; Shen, J.; Li, Y.; Chen, M.; Dai, X.; Liu, C.; Deng, W.; Dai, M.; Ingalls, A.E.; Stahl, D.A.; Herndl, G.J. (2020). Nitrifier adaptation to low energy flux controls inventory of reduced nitrogen in the dark ocean. Proc. Natl. Acad. Sci. U.S.A. 117(9): 4823-4830. https://dx.doi.org/10.1073/pnas.1912367117, meer Zhao, Z.; Baltar, F.; Herndl, G. (2020). Linking extracellular enzymes to phylogeny indicates a predominantly particle-associated lifestyle of deep-sea prokaryotes. Science Advances 6(16): eaaz4354. https://dx.doi.org/10.1126/sciadv.aaz4354, meer Baltar, F.; Bayer, B.; Bednaršek, N.; Deppeler, S.; Escribano, R.; Gonzalez, C.E.; Hansman, R.L.; Mishra, R.K.; Moran, M.A.; Repeta, D.J. (2019). Towards integrating evolution, metabolism, and climate change studies of marine ecosystems. Trends Ecol. Evol. 34(11): 1022-1033. https://dx.doi.org/10.1016/j.tree.2019.07.003, meer Baltar, F.; Herndl, G.J. (2019). Ideas and perspectives: Is dark carbon fixation relevant for oceanic primary production estimates? Biogeosciences 16(19): 3793-3799. https://dx.doi.org/10.5194/bg-16-3793-2019, meer Bayer, B.; Hansman, R.L.; Bittner, M.J.; Noriega-Ortega, B.E.; Niggemann, J.; Dittmar, T.; Herndl, G. (2019). Ammonia‐oxidizing archaea release a suite of organic compounds potentially fueling prokaryotic heterotrophy in the ocean. Environ. Microbiol. 21(11): 4062-4075. https://dx.doi.org/10.1111/1462-2920.14755, meer Bayer, B.; Vojvoda, J.; Reinthaler, T.; Reyes, C.; Pinto, M.; Herndl, G.J. (2019). Nitrosopumilus adriaticus sp. nov. and Nitrosopumilus piranensis sp. nov., two ammonia-oxidizing archaea from the Adriatic Sea and members of the class Nitrososphaeria. Int. J. Syst. Evol. Microbiol. 69(7): 1892-1902. https://dx.doi.org/10.1099/ijsem.0.003360, meer Bayer, B.; Pelikan, C.; Bittner, M.J.; Reinthaler, T.; Könneke, M.; Herndl, G.; Offre, P. (2019). Proteomic response of three marine ammonia-oxidizing archaea to hydrogen peroxide and their metabolic interactions with a heterotrophic alphaproteobacterium. mSystems 4(4): e00181-19. https://dx.doi.org/10.1128/msystems.00181-19, meer Bochdansky, A.B.; Dunbar, R.B.; Hansell, D.A.; Herndl, G.J. (2019). Estimating carbon flux from optically recording total particle volume at depths below the primary pycnocline. Front. Mar. Sci. 6. https://dx.doi.org/10.3389/fmars.2019.00778, meer Clifford, E.L.; Varela, M.M.; De Corte, D.; Bode, A.; Ortiz, V.; Herndl, G.J.; Sintes, E. (2019). Taurine is a major carbon and energy source for marine prokaryotes in the North Atlantic Ocean off the Iberian Peninsula. Microb. Ecol. 78(2): 299-312. https://dx.doi.org/10.1007/s00248-019-01320-y, meer De Corte, D.; Paredes, G.; Yokokawa, T.; Sintes, E.; Herndl, G.J. (2019). Differential response of Cafeteria roenbergensis to different bacterial and archaeal prey characteristics. Microb. Ecol. 78(1): 1-5. https://dx.doi.org/10.1007/s00248-018-1293-y, meer De Corte, D.; Martinez-Martinez, J.; Cretoiu, M.S.; Takaki, Y.; Nunoura, T.; Sintes, E.; Herndl, G.; Yokokawa, T. (2019). Viral communities in the global deep ocean conveyor belt assessed by targeted viromics. Front. Microbiol. 10: article 1801. https://doi.org/10.3389/fmicb.2019.01801, meer Köstner, N.; Jürgens, K.; Labrenz, M.; Herndl, G.J.; Winter, C. (2019). Uneven host cell growth causes lysogenic virus induction in the Baltic Sea. PLoS One 14(8): e0220716. https://dx.doi.org/10.1371/journal.pone.0220716, meer Muck, S.; De Corte, D.; Clifford, E.L.; Bayer, B.; Herndl, G.J.; Sintes, E. (2019). Niche differentiation of aerobic and anaerobic ammonia oxidizers in a high latitude deep oxygen minimum zone. Front. Microbiol. 10: article 2141. https://dx.doi.org/10.3389/fmicb.2019.02141, meer Pinto, M.; Langer, T.M.; Hüffer, T.; Hofmann, T.; Herndl, G.J. (2019). The composition of bacterial communities associated with plastic biofilms differs between different polymers and stages of biofilm succession. PLoS One 14(6): e0217165. https://dx.doi.org/10.1371/journal.pone.0217165, meer Steiner, P.A.; Sintes, E.; Simó, R.; De Corte, D.; Pfannkuchen, D.M.; Ivancic, I.; Najdek, M.; Herndl, G.J. (2019). Seasonal dynamics of marine snow‐associated and free‐living demethylating bacterial communities in the coastal northern Adriatic Sea. Environmental Microbiology Reports 11(5): 699-707. https://dx.doi.org/10.1111/1758-2229.12783, meer Steiner, P.A.; De Corte, D.; Geijo, J.; Mena, C.; Yokokawa, T.; Rattei, T.; Herndl, G.J.; Sintes, E. (2019). Highly variable mRNA half‐life time within marine bacterial taxa and functional genes. Environ. Microbiol. 21(10): 3873-3884. https://dx.doi.org/10.1111/1462-2920.14737, meer Thomson, B.; Wenley, J.; Currie, K.; Hepburn, C.; Herndl, G.J.; Baltar, F. (2019). Resolving the paradox: Continuous cell-free alkaline phosphatase activity despite high phosphate concentrations. Mar. Chem. 214: 103671. https://dx.doi.org/10.1016/j.marchem.2019.103671, meer Tinta, T.; Kogovsek, T.; Klun, K.; Malej, A.; Herndl, G.J.; Turk, V. (2019). Jellyfish-associated microbiome in the marine environment: exploring its biotechnological potential. Mar. Drugs 17(2): 94. https://dx.doi.org/10.3390/md17020094 , meer Bergauer, K.; Fernàndez-Guerra, A.; Garcia, J.A.L.; Sprenger, R.R.; Stepanauskas, R.; Pachiadaki, M.G.; Jensen, O.N.; Herndl, G. (2018). Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics. Proc. Natl. Acad. Sci. U.S.A. 115(3): E400-E408. https://dx.doi.org/10.1073/pnas.1708779115, meer De Corte, D.; Srivastava, A.; Koski, M.; Garcia, J.A.L.; Takaki, Y.; Yokokawa, T.; Elisabeth, N.H.; Nunoura, T.; Sintes, E.; Herndl, G.J. (2018). Metagenomic insights into zooplankton-associated bacterial communities. Environ. Microbiol. 20(2): 492-505. https://dx.doi.org/10.1111/1462-2920.13944, meer Engelen, A.H.; Aires, T.; Vermeij, M.J.A.; Herndl, G.J.; Serrão, E.A.; Frade, P.R. (2018). Host differentiation and compartmentalization of microbial communities in the azooxanthellate cupcorals Tubastrea coccinea and Rhizopsammia goesi in the Caribbean. Front. Mar. Sci. 5: 391. https://dx.doi.org/10.3389/fmars.2018.00391, meer Guerrero-Feijóo, E.; Sintes, E.; Herndl, G.J.; Varela, M.M. (2018). High dark inorganic carbon fixation rates by specific microbial groups in the Atlantic off the Galician coast (NW Iberian margin). Environ. Microbiol. 20(2): 602-611. https://dx.doi.org/10.1111/1462-2920.13984, meer Ivancic, I.; Paliaga, P.; Pfannkuchen, M.; Djakovac, T.; Najdek, M.; Steiner, P.; Korlevic, M.; Markovski, M.; Baricevic, A.; Tankovic, M.S.; Herndl, G. (2018). Seasonal variations in extracellular enzymatic activity in marine snow-associated microbial communities and their impact on the surrounding water. FEMS Microbiol. Ecol. 94(12): 11. https://doi.org/10.1093/femsec/fiy198, meer Romera-Castillo, C.; Pinto, M.; Langer, T.M.; Alvarez-Salgado, X.A.; Herndl, G. (2018). Dissolved organic carbon leaching from plastics stimulates microbial activity in the ocean. Nature Comm. 9(1): 7 pp. https://dx.doi.org/10.1038/s41467-018-03798-5, meer Clifford, E.L.; Hansell, D.A.; Varela, M.M.; Nieto-Cid, M.; Herndl, G.J.; Sintes, E. (2017). Crustacean zooplankton release copious amounts of dissolved organic matter as taurine in the ocean. Limnol. Oceanogr. 62(6): 2745-2758. https://dx.doi.org/10.1002/lno.10603, meer Debeljak, P.; Proietti, M.; Reisser, J.; Ferrari, F.F.; Abbas, B.; van Loosdrecht, M.C.M.; Slat, B.; Herndl, G.J. (2017). Extracting DNA from ocean microplastics: a method comparison study. Anal. Methods 9(9): 1521-1526. https://dx.doi.org/10.1039/C6AY03119F, meer Elling, F.J.; Könneke, M.; Nicol, G.W.; Stieglmeier, M.; Bayer, B.; Spieck, E.; de la Torre, J.R.; Becker, K.W.; Thomm, M.; Prosser, J.I.; Herndl, G.J.; Schleper, C.; Hinrichs, K.-U. (2017). Chemotaxonomic characterisation of the thaumarchaeal lipidome. Environ. Microbiol. 19(7): 2681-2700. https://doi.org/10.1111/1462-2920.13759, meer Glasl, B.; Bongaerts, P.; Elisabeth, N.H.; Hoegh-Guldberg, O.; Herndl, G.J.; Frade, P.R. (2017). Microbiome variation in corals with distinct depth distribution ranges across a shallow–mesophotic gradient (15–85 m). Coral Reefs 36(2): 447-452. https://dx.doi.org/10.1007/s00338-016-1517-x, meer Köstner, N.; Scharnreitner, L.; Jürgens, K.; Labrenz, M.; Herndl, G.J.; Winter, C. (2017). High viral abundance as a consequence of low viral decay in the Baltic Sea redoxcline. PLoS One 12(6): e0178467. https://dx.doi.org/10.1371/journal.pone.0178467, meer Landry, Z.; Swan, B.K.; Herndl, G.J.; Stepanauskas, R.; Giovannonia, S.J. (2017). SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation ofRecalcitrant Dissolved Organic Matter. Mbio 8(2): e00413-17. https://dx.doi.org/10.1128/mBio.00413-17, meer Pachiadaki, M.G.; Sintes, E.; Bergauer, K.; Brown, J.M.; Record, N.R.; Swan, B.K.; Mathyer, M.E.; Hallam, S.J.; López-Garcìa, P.; Takaki, Y.; Nunoura, T.; Woyke, T.; Herndl, G.J.; Stepanauskas, R. (2017). Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation. Science (Wash.) 358(6366): 1046-1051. https://dx.doi.org/10.1126/science.aan8260, meer Baltar, F.; Lundin, D.; Palovaara, J.; Lekunberri, I.; Reinthaler, T.; Herndl, G.; Pinhassi, J. (2016). Prokaryotic Responses to Ammonium and Organic Carbon Reveal Alternative CO2 Fixation Pathways and Importance of Alkaline Phosphatase in the Mesopelagic North Atlantic. Front. Microbiol. 7: 1670. dx.doi.org/10.3389/fmicb.2016.01670, meer Bayer, B.; Vojvoda, J.; Offre, P.; Alves, R.J.E.; Elisabeth, N.H.; Garcia, J.A.L.; Volland, J.-M.; Srivastava, A.; Schleper, C.; Herndl, G. (2016). Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation. ISME J. 10: 1051-1063. dx.doi.org/10.1038/ismej.2015.200, meer Bochdansky, A.B.; Clouse, M.A.; Herndl, G. (2016). Dragon kings of the deep sea: marine particles deviate markedly from the common number-size spectrum. NPG Scientific Reports 6(22633): 7 pp. http://dx.doi.org/10.1038/srep22633, meer De Corte, D.; Sintes, E.; Yokokawa, T.; Lekunberri, I.; Herndl, G. (2016). Large-scale distribution of microbial and viral populations in the South Atlantic Ocean. Environmental Microbiology Reports 8(2): 305-315. dx.doi.org/10.1111/1758-2229.12381, meer Frade, P.R.; Schwaninger, V.; Glasl, B.; Sintes, E.; Hill, R.W.; Simó, R.; Herndl, G. (2016). Dimethylsulfoniopropionate in corals and its interrelations with bacterial assemblages in coral surface mucus. Environ. Chem. 13: 252–265. dx.doi.org/10.1071/EN15023, meer Frade, P.R.; Roll, K.; Bergauer, K.; Herndl, G. (2016). Archaeal and Bacterial Communities Associated with the Surface Mucus of Caribbean Corals Differ in Their Degree of Host Specificity and Community Turnover Over Reefs. PLoS One 11(1): e0144702. dx.doi.org/10.1371/journal.pone.0144702, meer Frank, A.H.; Garcia, J.A.L.; Herndl, G.; Reinthaler, T. (2016). Connectivity between surface and deep waters determines prokaryotic diversity in the North Atlantic Deep Water. Environ. Microbiol. 18(6): 2052–2063. dx.doi.org/10.1111/1462-2920.13237, meer Frank, A.H.; Pontiller, B.; Herndl, G.; Reinthaler, T. (2016). Erythromycin and GC7 fail as domain-specific inhibitors for bacterial and archaeal activity in the open ocean . Aquat. Microb. Ecol. 77: 99-110. dx.doi.org/10.3354/ame01792, meer Glasl, B.; Herndl, G.; Frade, P.R. (2016). The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance. ISME J. 10: 2280–2292. dx.doi.org/10.1038/ismej.2016.9, meer Piquet, A.M.-T.; Maat, D.S.; Confurius-Guns, V.; Sintes, E.; Herndl, G.; van de Poll, W.H.; Wiencke, C.; Buma, A.G.J.; Bolhuis, H. (2016). Springtime dynamics, productivity and activity of prokaryotes in two Arctic fjords. Polar Biol. 39: 1749–1763. dx.doi.org/10.1007/s00300-015-1866-x, meer Sintes, E.; De Corte, D.; Haberleitner, E.; Herndl, G. (2016). Geographic Distribution of Archaeal Ammonia Oxidizing Ecotypes in the Atlantic Ocean. Front. Microbiol. 7: 77. dx.doi.org/10.3389/fmicb.2016.00077, meer Arrieta, J.M.; Mayol, E.; Hansman, R.L.; Herndl, G.J.; Dittmar, T.; Duarte, C.M. (2015). Dilution limits dissolved organic carbon utilization in the deep ocean. Science (Wash.) 348(6232): 331-333. http://dx.doi.org/10.1126/science.1258955, meer Arrieta, J.M.; Mayol, E.; Hansman, R.L.; Herndl, G.J.; Dittmar, T.; Duarte, C.M. (2015). Response to Comment on "Dilution limits dissolved organic carbon utilization in the deep ocean". Science (Wash.) 350(6267): 1483-1483. http://dx.doi.org/10.1126/science.aac7249, meer Hansman, R.L.; Dittmar, T.; Herndl, G.J. (2015). Conservation of dissolved organic matter molecular composition during mixing of the deep water masses of the northeast Atlantic Ocean. Mar. Chem. 177: 288–297. dx.doi.org/10.1016/j.marchem.2015.06.001, meer Malits, A.; Cattaneo, R.; Sintes, E.; Gasol, J.M.; Herndl, G.J.; Weinbauer, M.G. (2015). Potential impacts of black carbon on the marine microbial community. Aquat. Microb. Ecol. 75: 27-42. dx.doi.org/10.3354/ame01742, meer Sintes, E.; Ouillon, N.; Herndl, G.J. (2015). Macroecological patterns of archaeal ammonia oxidizers in the Atlantic Ocean. Mol. Ecol. 24: 4931–4942 . dx.doi.org/10.1111/mec.13365, meer De Corte, D.; Lekunberri, I.; Sintes, E.; Garcia, J.A.L.; Gonzalez, S.; Herndl, G.J. (2014). Linkage between copepods and bacteria in the North Atlantic Ocean. Aquat. Microb. Ecol. 72: 215-225. http://dx.doi.org/10.3354/ame01696, meer Muck, S.; Griessler, T.; Köstner, N.; Klimiuk, A.; Winter, C.; Herndl, G.J. (2014). Fracture zones in the Mid Atlantic Ridge lead to alterations in prokaryotic and viral parameters in deep-water masses. Front. Microbiol. 5: 264. http://dx.doi.org/10.3389/fmicb.2014.00264, meer Winter, C.; Garcia, J.A.L.; Weinbauer, M.G.; DuBow, M.S.; Herndl, G.J. (2014). Comparison of Deep-Water Viromes from the Atlantic Ocean and the Mediterranean Sea. PLoS One 9(6): e100600 1-8. http://dx.doi.org/10.1371/journal.pone.0100600, meer Zhang, Y.; Zhao, Z.; Dai, M.; Jiao, N.; Herndl, G.J. (2014). Drivers shaping the diversity and biogeography of total and active bacterial communities in the South China Sea. Mol. Ecol. 23(9): 2260-2274. dx.doi.org/10.1111/mec.12739, meer Assmy, P.; Smetacek, V.; Klaas, C.; Henjes, J.; Strass, V.H.; Arrieta, J.M.; Bathmann, U.; Cisewski, B.; Fuchs, N.; Herndl, G.J. (2013). Thick-shelled, grazer-protected diatoms decouple ocean carbon and silicon cycles in the iron-limited Antarctic Circumpolar Current. Proc. Natl. Acad. Sci. U.S.A. 110(51): 20633–20638. http://dx.doi.org/10.1073/pnas.1309345110, meer Baltar, F.; Arístegui, J.; Gasol, J.M.; Yokokawa, T.; Herndl, G.J. (2013). Bacterial Versus Archaeal Origin of Extracellular Enzymatic Activity in the Northeast Atlantic Deep Waters. Microb. Ecol. 65(2): 277-288. dx.doi.org/10.1007/s00248-012-0126-7, meer Baltar, F.; Reinthaler, T.; Herndl, G.J.; Pinhassi, J. (2013). Major Effect of Hydrogen Peroxide on Bacterioplankton Metabolism in the Northeast Atlantic. PLoS One 8(4). dx.doi.org/10.1371/journal.pone.0061051, meer Bergauer, K.; Sintes, E.; van Bleijswijk, J.; Witte, H.; Herndl, G.J. (2013). Abundance and distribution of archaeal acetyl-CoA/propionyl-CoA carboxylase genes indicative for putatively chemoautotrophic Archaea in the tropical Atlantic's interior. FEMS Microbiol. Ecol. 84(3): 461-473. dx.doi.org/10.1111/1574-6941.12073, meer Calleja, M.L.; Duarte, C.M.; Álvarez, M.; Vaquer-Sunyer, R.; Agustí, S.; Herndl, G.J. (2013). Prevalence of strong vertical CO2 and O2 variability in the top meters of the ocean. Global Biogeochem. Cycles 27: 941–949. http://dx.doi.org/10.1002/gbc.20081, meer De Corte, D.; Sintes, E.; Yokokawa, T.; Herndl, G.; De Corte, D. (2013). Comparison between MICRO-CARD-FISH and 16S rRNA gene clone libraries toassess the active versus total bacterial community in the coastal Arctic. Environmental Microbiology Reports 5(2): 272-281. dx.doi.org/10.1111/1758-2229.12013, meer Herndl, G.J.; Reinthaler, T. (2013). Microbial control of the dark end of the biological pump. Nature Geoscience 6(9): 718-724. dx.doi.org/10.1038/NGEO1921, meer Lekunberri, I.; Sintes, E.; de Corte, D.; Yokokawa, T.; Herndl, G.J. (2013). Spatial patterns of bacterial and archaeal communities along the Romanche Fracture Zone (tropical Atlantic). FEMS Microbiol. Ecol. 85(3): 537-552. dx.doi.org/10.1111/1574-6941.12142, meer Reinthaler, T.; Herndl, G.J.; Álvarez-Salgado, X.A.; Álvarez, M.; van Aken, H.M. (2013). Impact of water mass mixing on the biogeochemistry and microbiology of the Northeast Atlantic Deep Water. Global Biogeochem. Cycles 27(4): 1151–1162. http://dx.doi.org/10.1002/2013GB004634, meer Sintes, E.; Witte, H.; Stodderegger, K.; Steiner, P.; Herndl, G.J. (2013). Temporal dynamics in the free-living bacterial community composition in the coastal North Sea. FEMS Microbiol. Ecol. 83(2): 413-424. dx.doi.org/10.1111/1574-6941.12003, meer Baltar, F.; Aristegui, J.; Gasol, J.M.; Herndl, G.J. (2012). Microbial Functioning and Community Structure Variability in the Mesopelagic and Epipelagic Waters of the Subtropical Northeast Atlantic Ocean. Appl. Environ. Microbiol. 78(9): 3309-3316. dx.doi.org/10.1128/AEM.07962-11, meer De Corte, D.; Sintes, E.; Yokokawa, T.; Reinthaler, T.; Herndl, G.J. (2012). Links between viruses and prokaryotes throughout the water column along a North Atlantic latitudinal transect. ISME J. 6(8): 1566-1577. dx.doi.org/10.1038/ismej.2011.214, meer Smetacek, V.; Klaas, C.; Strass, V.H.; Assmy, P.; Montresor, M.; Cisewski, B.; Savoye, N.; Webb, A.; d'Ovidio, F.; Arrieta, J.M.; Bathmann, U.; Bellerby, R.; Berg, G.M.; Croot, P.; Gonzalez, S.; Henjes, J.; Herndl, G.J.; Hoffmann, L.J.; Leach, H.; Losch, M.; Mills, M.M.; Neill, C.; Peeken, I.; Röttgers, R.; Sachs, O.; Sauter, E.; Schmidt, M.M.; Schwarz, J.; Terbrüggen, A.; Wolf-Gladrow, D. (2012). Deep carbon export from a Southern Ocean iron-fertilized diatom bloom. Nature (Lond.) 487(7407): 313-319. https://dx.doi.org/10.1038/nature11229, meer Thomas, H.; Craig, S.E.; Greenan, B.J.W.; Burt, W.; Herndl, G.J.; Higginson, S.; Salt, L.; Shadwick, E.H.; Urrego-Blanco, J. (2012). Direct observations of diel biological CO2 fixation on the Scotian Shelf, northwestern Atlantic Ocean. Biogeosciences 9(6): 2301-2309. dx.doi.org/10.5194/bg-9-2301-2012, meer Yokokawa, T.; Sintes, E.; de Corte, D.; Olbrich, K.; Herndl, G.J. (2012). Differentiating leucine incorporation of Archaea and Bacteria throughout the water column of the eastern Atlantic using metabolic inhibitors. Aquat. Microb. Ecol. 66(3): 247-256. dx.doi.org/10.3354/ame01575, meer Agogue, H.; Lamy, D.; Neal, P.R.; Sogin, M.L.; Herndl, G.J. (2011). Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing. Mol. Ecol. 20(2): 258-274. dx.doi.org/10.1111/j.1365-294X.2010.04932.x, meer de Corte, D.; Sintes, E.; Yokokawa, T.; Herndl, G.J.; de Corte, D. (2011). Changes in viral and bacterial communities during the ice-melting season in the coastal Arctic (Kongsfjorden, Ny-Ålesund). Environ. Microbiol. 13(7): 1827-1841. dx.doi.org/10.1111/j.1462-2920.2011.02497.x, meer Llabres, M.; Agustí, S.; Herndl, G.J. (2011). Diel in situ picophytoplankton cell death cycles coupled with cell division. J. Phycol. 47(6): 1247-1257. dx.doi.org/10.1111/j.1529-8817.2011.01072.x, meer Morgan-Smith, D.; Herndl, G.J.; van Aken, H.M.; Bochdansky, A.B. (2011). Abundance of eukaryotic microbes in the deep subtropical North Atlantic. Aquat. Microb. Ecol. 65(2): 103-115. dx.doi.org/10.3354/ame01536, meer Muia, A.W.; Bretschko, G.; Herndl, G.J. (2011). An overview of the structure and function of microbial biofilms, withspecial emphasis on heterotrophic aquatic microbial communities. Afr. J. Aquat. Sci. 36(1): 1-10. dx.doi.org/10.2989/16085914.2011.562279, meer Varela, M.M.; van Aken, H.M.; Sintes, E.; Reinthaler, T.; Herndl, G.J. (2011). Contribution of Crenarchaeota and Bacteria to autotrophy in the North Atlantic interior. Environ. Microbiol. 13(6): 1524-1533. dx.doi.org/10.1111/j.1462-2920.2011.02457.x, meer Llabrés, M.; Agusti, S.; Alonso-Laita, P.; Herndl, G.J. (2010). Synechococcus and Prochlorococcus cell death induced by UV radiation and the penetration of lethal UVR in the Mediterranean Sea. Mar. Ecol. Prog. Ser. 399: 27-37. http://dx.doi.org/10.3354/meps08332, meer Agogué, H.; Brink, M.; Herndl, G.J. (2008). Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic. Nature (Lond.) 456(7223): 788-791, meer Parada, V.; Herndl, G.J.; Weinbauer, M.G. (2006). Viral burst size of heterotrophic prokaryotes in aquatic systems. J. Mar. Biol. Ass. U.K. 86(3): 613-621. https://dx.doi.org/10.1017/S002531540601352X, meer
Peer reviewed publicatie [show]
Lønborg, C.; Yokokawa, T.; Herndl, G.J.; Alvarez-Salgado, X.A. (2015). Production and degradation of fluorescent dissolved organic matter in surface waters of the eastern north Atlantic ocean. Deep-Sea Res. Pt. A: Oceanogr. Res. Pap.A: Oceanogr. Res. Pap 96: 28–37. dx.doi.org/10.1016/j.dsr.2014.11.001, meer
Boekhoofdstukken (4) [show]
Amaral-Zettler, L.; Artigas, L.F.; Baross, J.A.; Bharathi, P.A.L.; Boetius, A.; Chandramohan, D.; Herndl, G.J.; Kogure, K.; Neal, P.R.; Pedrós-Alió, C.; Ramette, A.; Schouten, S.; Stal, L.J.; Thessen, A.; de Leeuw, J.W.; Sogin, M.L. (2010). A global census of marine microbes, in: Mcintyre, A.D. (Ed.) Life in the world's oceans: diversity, distribution, and abundance. pp. 223-245, meer Gasol, J.M.; Lebaron, P.; Herndl, G.J.; Hagström, Å.; Bordat, P.; Weinbauer, M.; Archer, S.D.; Pernthaler, J.; Fuchs, B.; Thingstad, T.F.; Heldal, M.; Burkill, P.H.; Zubkov, M.V. (2007). Bacterial single-cell approaches to the relationschip between diversity and function in the sea (BASICS), in: Cieslikiewicz, W. et al. (Ed.) Proceedings of the EurOCEAN 2004: European Conference on Marine Science & Ocean Technology: Celebrating European marine science; building the European research area; communicating marine science, Galway, Ireland, 10-13 May 2004. pp. 144-145, meer Heip, C.H.R.; Brandt, A.; Gattuso, J.P.; Antia, A.; Berger, W.H.; Boissonnas, J.; Burkill, P.H.; d'Ozouville, L.; Graf, G.; Herndl, G.J.; Patching, J.; Reise, K.; Riou, G.; Simó, R.; Smetacek, V.; Wassmann, P. (2003). Ecosystem functioning and biodiversity, in: Wefer, G. et al. (Ed.) Marine science frontiers for Europe. pp. 289-302, meer Herndl, G.J.; Weinbauer, M.G. (2003). Marine microbial food web structure and function, in: Wefer, G. et al. (Ed.) Marine science frontiers for Europe. pp. 265-277, meer
Abstracts (3) [show]
Lebaron, P.; Herndl, G.J.; Saliot, A.; Albaiges, J.; Bordat, P.C. (2007). Structure and role of biological communities involved in the transport and transformation of persistent pollutants at the marine AIR-Water Interface (AIRWIN), in: Cieslikiewicz, W. et al. (Ed.) Proceedings of the EurOCEAN 2004: European Conference on Marine Science & Ocean Technology: Celebrating European marine science; building the European research area; communicating marine science, Galway, Ireland, 10-13 May 2004. pp. 219-220, meer Gasol, J.M.; Lebaron, P.; Herndl, G.J.; Hagström, Å.; Bordat, P.; Weinbauer, M.; Archer, S.D.; Pernthaler, J.; Fuchs, B.; Thingstad, T.F.; Heldal, M.; Burkill, P.H.; Zubkov, M.V. (2004). Bacterial single-cell approaches to the relationship between diversity and function in the sea (BASICS), in: EurOCEAN 2004: European Conference on Marine Science and Ocean Technology, 10th - 13th May 2004, Galway, Ireland: Abstract book. pp. 8-9, meer Lebaron, P.; Herndl, G.J.; Saliot, A.; Albaiges, J.; Bordat, P.C. (2004). Structure and role of biological communities involved in the transport and transformation of persistent pollutants at the marine AIR-Water Interface (AIRWIN), in: European Conference on Marine Science and Ocean Technology. Celebrating European marine science: building the European research area: communicating marine science, 10th - 13th May 2004, Galway, Ireland: abstract book. pp. 61-62, meer
Thesis (co-)promotor [show]
De Corte, D. (2012). Interaction between viruses and prokaryotes in the sea. PhD Thesis. Rijksuniversiteit Groningen: Groningen. ISBN 978-90-367-5507-8. 153 pp. hdl.handle.net/11370/5eb51ed6-c423-4256-93fc-c98f71aa41e0, meer

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