Open WL Archief (OWA)

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Het OWA, het open archief van het Waterbouwkundig Laboratorium heeft tot doel alle vrij toegankelijke onderzoeksresultaten van dit instituut in digitale vorm aan te bieden. Op die manier wil het de zichtbaarheid, verspreiding en gebruik van deze onderzoeksresultaten, alsook de wetenschappelijke communicatie maximaal bevorderen.

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Laboratorium voor Microbiologie (UGent)

lmg.ugent.be seadatanet.maris2.nl/v_edmo/print.asp?n_code=2039

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Engelse naam: Laboratory of Microbiology Overkoepelend instituut: Universiteit Gent; Faculteit Wetenschappen; Vakgroep Biochemie en Microbiologie (UGent), meer Thesaurustermen (6) : Antibiotic resistance; Bacterial diseases; Bacteriën; Microbiologie; Moleculaire biologie; Molecular taxonomy MOG-kernwoorden (6) : Biochemie; Biodiversiteit; Ecosysteemfunctioneren; Microbiologie; Moleculaire biologie; Taxonomie Adres: K. L. Ledeganckstraat 35 9000 Gent België Tel.: +32-(0)9-264 51 28 Fax: +32-(0)9-264 53 46 E-mail:		Personen | Publicaties | Projecten
Type: Wetenschappelijk

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¹ Directeur: Hoofd van de onderzoeksgroep/afdeling

² Mariene onderzoeker: Is werkzaam in deze groep en treedt op als (co)auteur in minstens één mariene publicatie in de laatste 5 jaar.

³ Gespecialiseerd personeel: Levert administratieve of technische ondersteuning aan het zeewetenschappelijk onderzoek.

Personen (12)	Top | Publicaties | Projecten
Vandamme, Peter Willems, Anne Cleenwerck, Ilse Cnockaert, Margo De Canck, Evelien De Cock, Lasse De Wachter, Marjan Hoste, Bart 2 Lebbe, Liesbeth 3 Tollens, Nadine Vercoutere, Els Verstraeten, Epifania 3

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Voormalig geassocieerde personen (45)

De Vos, Paul 1, 2 Huys, Geert 1, 2 Casteleyn, Griet Clercx, Pia 3 Coorevits, An Dawyndt, Peter De Brandt, Evie 3 De Bruyne, Lies Debruyne, Lies Decleyre, Helen 2 Delaere, Manuel Dumolin, Charles Gevers, Dirk Gillis, Monique Gök, Duygu Heylen, Kim 2 Heyrman, Jeroen Hoefman, Sven Hollants, Joke Kartal, Boran Martens, Miet Masco, Liesbeth Mergaert, Joris 2 Naser, Sabri Peeters, Charlotte Peeters, Karolien 2 Reekmans, Rieka Scheirlinck, Ilse Segaert, Eveline Storms, Virginie Stragier, Pieter Swings, Jean Tahon, Guillaume Tytgat, Bjorn Van Brabant, Bart Van Der Gucht, Katleen van Gremberghe, Ineke Van Hoorde, Koenraad Vancanneyt, Marc Vandecandelaere, Ilse Vandroemme, Joachim Vanhoutte, Tom Vanlaere, Elke Vanparys, Bram Vekeman, Bram 2

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Abstract:

Het laboratorium voor Microbiologie (LM-UGent) werd opgericht in 1959. Het laboratorium richt zich op onderzoeksthema's als microbiële diversiteit, taxonomie, ecologie en diagnostiek in verschillende sectoren waaronder de medische, voedings- en omgevingsmicrobiologie, inclusief mariene microbiologie. Daarnaast huisvest deze groep de Belgian Coordinated Collections of Micro-organisms/Laboratorium voor Microbiologie, Universiteit Gent (BCCM/LMG) Bacteria Collectie die meer dan 27.000 stammen bevat, behorend tot meer dan 500 genera en 3.000 soorten. De BCCM/LMG Bacteria Collectie werd opgestart in 1982 als een door BELSPO gesteund project aan LM-UGent waarmee de toekomst van de bacteriënverzameling werd verzekerd die sinds de oprichting van het laboratorium was gegroeid. Het marien onderzoek concentreert zich op de volgende onderwerpen: onderzoek naar biodiversiteiteffecten op het functioneren van mariene benthische ecosystemen met een focus op de rol (en diversiteit) van bacteriën, vooral in de Paulinapolder in het Schelde-estuarium en het Belgische deel van de Noordzee. Bijzondere aandacht gaat uit naar de stikstof- en koolstofcyclus, intertidale benthische biofilms en interacties tussen diatomeeën, bacteriën en copepoden; studie van de biodiversiteit, specificiteit en functie van endosymbiotische bacteriën in macroalgen; identificatie en classificatie van nieuwe mariene bacteriën, met inbegrip van genoomanalyse; karakterisering van enzymen van mariene bacteriën. De groep is actief binnen diverse nationale en internationale projecten en werkt binnen de UGent intensief samen met de onderzoeksgroepen Mariene Biologie, Algologie, Protistologie en Aquatische Ecologie en het laboratorium voor Microbiële Ecologie en Technologie. Het laboratorium maakt deel uit van het Marine@UGent consortium en is partner binnen EMBRC.

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Publicaties (153)

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( 120 peer reviewed ) opsplitsen filter Ratnawati, S.E.; Kuuliala, L.; Verschuere, N.; Cnockaert, M.; Vandamme, P.; Devlieghere, F. (2024). The exploration of dominant spoilage bacteria in blue mussels (Mytilus edulis) stored under different modified atmospheres by MALDI-TOF MS in combination with 16S rRNA sequencing. Food Microbiol. 118: 104407. https://dx.doi.org/10.1016/j.fm.2023.104407, meer Saelens, G.; Houf, K. (2024). The involvement of Pseudoterranova decipiens fish infestation on the shelf-life of fresh Atlantic cod (Gadus morhua) fillet. Intern. J. Food Microbiol. 410: 110426. https://dx.doi.org/10.1016/j.ijfoodmicro.2023.110426, meer van der Loos, L.M.; De Wilde, C.; Willems, A.; De Clerck, O.; Steinhagen, S. (2024). The cultivated sea lettuce (Ulva) microbiome: Successional and seasonal dynamics. Aquaculture 585: 740692. https://dx.doi.org/10.1016/j.aquaculture.2024.740692, meer van der Loos, L.M.; De Coninck, L.; Zell, R.; Lequime, S.; Willems, A.; De Clerck, O.; Matthijnssens, J. (2023). Highly divergent CRESS DNA and picorna-like viruses associated with bleached thalli of the green seaweed Ulva. Microbiology Spectrum 11(5): 1-25. https://dx.doi.org/10.1128/spectrum.00255-23, meer van der Loos, L.M.; D'hondt, S.; Engelen, A.H.; Pavia, H.; Toth, G.B.; Willems, A.; Weinberger, F.; De Clerck, O.; Steinhagen, S. (2023). Salinity and host drive Ulva-associated bacterial communities across the Atlantic-Baltic Sea gradient. Mol. Ecol. 32(23): 6260-6277. https://dx.doi.org/10.1111/mec.16462, meer Filek, K.; Lebbe, L.; Willems, A.; Chaerle, P.; Vyverman, W.; Žižek, M.; Bosak, S. (2022). More than just hitchhikers: a survey of bacterial communities associated with diatoms originating from sea turtles. FEMS Microbiol. Ecol. 98(10): fiac104. https://dx.doi.org/10.1093/femsec/fiac104, meer Saelens, G.; Planckaert, S.; Martínez-Sernández, V.; Ubeira, F.M.; Devreese, B.; Gabriël, S. (2022). Targeted proteomics and specific immunoassays reveal the presence of shared allergens between the zoonotic nematodes Anisakis simplex and Pseudoterranova decipiens. NPG Scientific Reports 12(1): 4127. https://dx.doi.org/10.1038/s41598-022-08113-3, meer Saelens, G.; Houf, K. (2022). Systematic review and critical reflection on the isolation and identification methods for spoilage associated bacteria in fresh marine fish. J. microbiol. methods 203: 106599. https://dx.doi.org/10.1016/j.mimet.2022.106599, meer Stock, W.; Willems, A.; Mangelinckx, S.; Vyverman, W.; Sabbe, K. (2022). Selection constrains lottery assembly in the microbiomes of closely related diatom species. ISME Commun. 2(1): 11. https://dx.doi.org/10.1038/s43705-022-00091-x, meer Thuy, D.T.B.; An, N.T.; Jayasena, V.; Vandamme, P. (2022). A comprehensive investigation into the production of gamma-aminobutyric acid by Limosilactobacillus fermentum NG16, a tuna gut isolate. Acta Alimentaria 51(2): 302-311. https://dx.doi.org/10.1556/066.2022.00065, meer Depoorter, E.; Coenye, T.; Vandamme, P. (2021). Biosynthesis of ditropolonyl sulfide, an antibacterial compound produced by Burkholderia cepacia complex strain R-12632. Appl. Environ. Microbiol. 87(22): e01169-21. https://dx.doi.org/10.1128/aem.01169-21, meer Dumolin, C.; Peeters, C.; De Canck, E.; Boon, N.; Vandamme, P. (2021). Network analysis based on unique spectral features enables an efficient selection of genomically diverse operational isolation units. Microorganisms 9(2): 416. https://dx.doi.org/10.3390/microorganisms9020416, meer Morrissey, K.L.; Ivesa, L.; Delva, S.; D'hondt, S.; Willems, A.; De Clerck, O. (2021). Impacts of environmental stress on resistance and resilience of algal-associated bacterial communities. Ecol. Evol. 11(21): 15004-15019. https://dx.doi.org/10.1002/ece3.8184, meer Rat, R.; Naranjo, H.D.; Lebbe, L.; Cnockaert, M.; Krigas, N.; Grigoriadou, K.; Maloupa, E.; Willems, A. (2021). Roseomonas hellenica sp. nov., isolated from roots of wild-growing Alkanna tinctoria. Syst. Appl. Microbiol. 44(3): 126206. https://dx.doi.org/10.1016/j.syapm.2021.126206, meer Tahon, G.; Gök, D.; Lebbe, L.; Willems, A. (2021). Description and functional testing of four species of the novel phototrophic genus Chioneia gen. nov., isolated from different East Antarctic environments. Syst. Appl. Microbiol. 44(6): 126250. https://dx.doi.org/10.1016/j.syapm.2021.126250, meer Tahon, G.; Lebbe, L.; Willems, A. (2021). Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica. Int. J. Syst. Evol. Microbiol. 71(3): 004754. https://dx.doi.org/10.1099/ijsem.0.004754, meer van der Loos, L.; Leliaert, F.; Willems, A.; De Clerck, O. (2021). Characterizing the Ulva microbiome with long-reads from nanopore sequencing. Phycologia 60(S1): 38-38. https://dx.doi.org/10.1080/00318884.2021.1922050, meer van der Loos, L.M.; D'hondt, S.; Willems, A.; De Clerck, O. (2021). Characterizing algal microbiomes using long-read nanopore sequencing. Algal Research 59: 102456. https://dx.doi.org/10.1016/j.algal.2021.102456, meer Vanwijnsberghe, S.; Peeters, C.; De Ridder, E.; Dumolin, C.; Wieme, A.D.; Boon, N.; Vandamme, P. (2021). Genomic aromatic compound degradation potential of novel Paraburkholderia species: Paraburkholderia domus sp. nov., Paraburkholderia haematera sp. nov. and Paraburkholderia nemoris sp. nov. International Journal of Molecular Sciences 22(13): 7003. https://dx.doi.org/10.3390/ijms22137003, meer Dumolin, C.; Peeters, C.; Ehsani, E.; Tahon, G.; De Canck, E.; Cnockaert, M.; Boon, N.; Vandamme, P. (2020). Achromobacter veterisilvae sp. nov., from a mixed hydrogen-oxidizing bacteria enrichment reactor for microbial protein production. Int. J. Syst. Evol. Microbiol. 70(1): 530-536. https://dx.doi.org/10.1099/ijsem.0.003786, meer Salazar, V.W.; Tschoeke, D.A.; Swings, J.; Cosenza, C.A.; Mattoso, M.; Thompson, C.C.; Thompson, F.L. (2020). A new genomic taxonomy system for the Synechococcus collective. Environ. Microbiol. 22(11): 4557-4570. https://hdl.handle.net/10.1111/1462-2920.15173, meer Tahon, G.; Lebbe, L.; De Troch, M.; Sabbe, K.; Willems, A. (2020). Leeuwenhoekiella aestuarii sp. nov., isolated from salt-water sediment and first insights in the genomes of Leeuwenhoekiella species. Int. J. Syst. Evol. Microbiol. 70(3): 1706-1719. https://dx.doi.org/10.1099/ijsem.0.003959, meer Thuy, D.T.B.; Nguyen, A.T.; Khoo, K.S.; Chew, K.W.; Cnockaert, M.; Vandamme, P.; Ho, Y.-C.; Huy, N.D.; Cocoletzi, H.H.; Show, P.L. (2020). Optimization of culture conditions for gamma-aminobutyric acid production by newly identified Pediococcus pentosaceus MN12 isolated from ‘mam nem’, a fermented fish sauce. Bioengineered 12(1): 54-62. https://dx.doi.org/10.1080/21655979.2020.1857626, meer Tschoeke, D.; Salazar, V.W.; Vidal, L.; Campeão, M.; Swings, J.; Thompson, F.; Thompson, C. (2020). Unlocking the genomic taxonomy of the Prochlorococcus collective. Microb. Ecol. 80(3): 546-558. https://hdl.handle.net/10.1007/s00248-020-01526-5, meer Van Landuyt, J.; Cimmino, L.; Dumolin, C.; Chatzigiannidou, I.; Taveirne, F.; Mattelin, V.; Zhang, Y.; Vandamme, P.; Scoma, A.; Williamson, A.; Boon, N. (2020). Microbial enrichment, functional characterization and isolation from a cold seep yield piezotolerant obligate hydrocarbon degraders. FEMS Microbiol. Ecol. 96(9): fiaa097. https://dx.doi.org/10.1093/femsec/fiaa097, meer Ehsani, E.; Dumolin, C.; Arends, J.B.A.; Kerckhof, F.-M.; Hu, X.; Vandamme, P.; Boon, N. (2019). Enriched hydrogen-oxidizing microbiomes show a high diversity of co-existing hydrogen-oxidizing bacteria. Appl. Microbiol. Biotechnol. 103(19): 8241-8253. https://dx.doi.org/10.1007/s00253-019-10082-z, meer Giraldo, J.B.; Stock, W.; Dow, L.; Roef, L.; Willems, A.; Mangelinckx, S.; Kroth, P.G.; Vyverman, W.; Michiels, M. (2019). Influence of the algal microbiome on biofouling during industrial cultivation of Nannochloropsis sp. in closed photobioreactors. Algal Research 42: 101591. https://dx.doi.org/10.1016/j.algal.2019.101591, meer Koedooder, C.; Stock, W.; Willems, A.; Mangelinckx, S.; De Troch, M.; Vyverman, W.; Sabbe, K. (2019). Diatom-bacteria interactions modulate the composition and productivity of benthic diatom biofilms. Front. Microbiol. 10: 1255. https://dx.doi.org/10.3389/fmicb.2019.01255, meer Morrissey, K.L.; Çavas, L.; Willems, A.; De Clerck, O. (2019). Disentangling the influence of environment, host specificity and thallus differentiation on bacteria communities in siphonous green seaweeds. Front. Microbiol. 10: 717. https://dx.doi.org/10.3389/fmicb.2019.00717, meer Stock, F.; Syrpas, M.; van Creveld, S.G.; Backx, S.; Blommaert, L.; Dow, L.; Stock, W.; Ruysbergh, E.; Lepetit, B.; Bailleul, B.; Sabbe, K.; De Kimpe, N.; Willems, A.; Kroth, P.G.; Vardi, A.; Vyverman, W.; Mangelinckx, S. (2019). N-acyl homoserine lactone derived tetramic acids impair photosynthesis in Phaeodactylum tricornutum. ACS Chemical Biology 14(2): 198-203. https://dx.doi.org/10.1021/acschembio.8b01101, meer Stock, W.; Blommaert, L.; De Troch, M.; Mangelinckx, S.; Willems, A.; Vyverman, W.; Sabbe, K. (2019). Host specificity in diatom-bacteria interactions alleviates antagonistic effects. FEMS Microbiol. Ecol. 95(11): fiz171. https://dx.doi.org/10.1093/femsec/fiz171, meer Yamazaki, Y.; Sakai, Y.; Mino, S.; Suda, W.; Hattori, M.; Meirelles, P.M.; Thompson, F.L.; Sawabe, T. (2019). Repeated selective enrichment process of sediment microbiota occurred in sea cucumber guts. Environmental Microbiology Reports 11(6): 797-807. https://dx.doi.org/10.1111/1758-2229.12791, meer Tahon, G.; Tytgat, B.; Lebbe, L.; Carlier, A.; Willems, A. (2018). Abditibacterium utsteinense sp. nov., the first cultivated member of candidate phylum FBP, isolated from ice-free Antarctic soil samples. Syst. Appl. Microbiol. 41(4): 279-290. https://dx.doi.org/10.1016/j.syapm.2018.01.009, meer Yazdani Foshtomi, M.; Leliaert, F.; Derycke, S.; Willems, A.; Vincx, M.; Vanaverbeke, J. (2018). The effect of bio-irrigation by the polychaete Lanice conchilega on active denitrifiers: distribution, diversity and composition of nosZ gene. PLoS One 13(2): e0192391. https://dx.doi.org/10.1371/journal.pone.0192391, meer Morrissey, K.L.; De Clerck, O.; Willems, A. (2017). Exploring bacterial diversity in invasive green algae. Phycologia 56(Supplement 4): 131-131, meer Tanaka, R.; Cleenwerck, I.; Mizutani, Y.; Iehata, S.; Bossier, P.; Vandamme, P. (2017). Arcobacter haliotis sp. nov., isolated from abalone species Haliotis gigantea. Int. J. Syst. Evol. Microbiol. 67(8): 3050-3056. https://dx.doi.org/10.1099/ijsem.0.002080, meer Vekeman, B.; Dumolin, C.; De Vos, P.; Heylen, K. (2017). Improved enrichment culture technique for methane-oxidizing bacteria from marine ecosystems: the effect of adhesion material and gas composition. Antonie van Leeuwenhoek 110(2): 281-289. https://dx.doi.org/10.1007/s10482-016-0787-1, meer Walter, J.M.; Coutinho, F.H.; Dutilh, B.E.; Swings, J.; Thompson, F.L.; Thompson, C. (2017). Ecogenomics and taxonomy of Cyanobacteria phylum. Front. Microbiol. 8: 2132. https://dx.doi.org/10.3389/fmicb.2017.02132, meer Appolinario, L.; Tschoeke, D.; Rua, C.; Venas, T.; Campeao, M.; Amaral, G.; Leomil, L.; de Oliveira, L.; Vieira, V.; Otsuki, K.; Swings, J.; Thompson, F.; Thompson, C. (2016). Description of Endozoicomonas arenosclerae sp. nov. using a genomic taxonomy approach. Antonie van Leeuwenhoek 109(3): 431-438. https://dx.doi.org/10.1007/s10482-016-0649-x, meer Decleyre, H.; Heylen, K.; Tytgat, B.; Willems, A. (2016). Highly diverse nirK genes comprise two major clades that harbour ammonium-producing denitrifiers. BMC Genom. 17(155): 13 pp. https://dx.doi.org/10.1186/s12864-016-2465-0, meer Mancuso, F.P.; D'Hondt, S.; Willems, A.; Airoldi, L.; De Clerck, O. (2016). Diversity and temporal dynamics of the epiphytic bacterial communities associated with the canopy-forming seaweed Cystoseira cornpressa (Esper) Gerloff and Nizamuddin. Front. Microbiol. 7: 11 pp. http://dx.doi.org/10.3389/fmicb.2016.00476, meer Obbels, D.; Verleyen, E.; Mano, M.-J.; Namsaraev, Z.; Sweetlove, M.; Tytgat, B.; Fernandez-Carazo, R.; De Wever, A.; D'Hondt, S.; Ertz, D.; Elster, J.; Sabbe, K.; Willems, A.; Wilmotte, A.; Vyverman, W. (2016). Bacterial and eukaryotic biodiversity patterns in terrestrial and aquatic habitats in the Sør Rondane Mountains, Dronning Maud Land, East Antarctica. FEMS Microbiol. Ecol. 92(6): 1-13. https://dx.doi.org/10.1093/femsec/fiw041, meer Schaeck, M.; Duchateau, L.; Van Den Broeck, W.; Van Trappen, S.; De Vos, P.; Coulombet, C.; Boon, N.; Haesebrouck, F.; Decostere, A. (2016). Vibrio lentus protects gnotobiotic sea bass (Dicentrarchus labrax L.) larvae against challenge with Vibrio harveyi. Vet. Microbiol. 185: 41-48. https://dx.doi.org/10.1016/j.vetmic.2016.01.024, meer Tahon, G.; Tytgat, B.; Stragier, P.; Willems, A. (2016). Analysis of cbbL, nifH, and pufLM in soils from the Sør Rondane Mountains, Antarctica, reveals a large diversity of autotrophic and phototrophic bacteria. Environ. Microbiol. 71(1): 131-149. https://dx.doi.org/10.1007/s00248-015-0704-6, meer Tahon, G.; Tytgat, B.; Willems, A. (2016). Diversity of phototrophic genes suggests multiple bacteria may be able to exploit sunlight in exposed soils from the Sør Rondane Mountains, East Antarctica. Front. Microbiol. 7(2026): 17 pp. https://doi.org/10.3389/fmicb.2016.02026, meer Tytgat, B.; Verleyen, E.; Sweetlove, M.; D’Hondt, S.; Clercx, P.; Van Ranst, E.; Peeters, K.; Roberts, S.; Namsaraev, Z.; Wilmotte, A.; Vyverman, W.; Willems, A. (2016). Bacterial community composition in relation to bedrock type and macrobiota in soils from the Sør Rondane Mountains, East Antarctica. FEMS Microbiol. Ecol. 92(9): 13 pp. https://dx.doi.org/10.1093/femsec/fiw126, meer Vekeman, B.; Speth, D.; Wille, J.; Cremers, G.; de Vos, P.; Op den Camp, H.J.M.; Heylen, K. (2016). Genome characteristics of two novel Type I methanotrophs enriched from North Sea sediments containing exclusively a lanthanid-dependent XoxF5-type methanol dehydrogenase. Microb. Ecol. 72(3): 503-509. https://dx.doi.org/10.1007/s00248-016-0808-7, meer Vekeman, B.; Kerckhof, F.-M.; Cremers, G.; de Vos, P.; Vandamme, P.; Boon, N.; Op den Camp, H.J.M.; Heylen, K. (2016). New Methyloceanibacter diversity from North Sea sediments includes methanotroph containing solely the soluble methane monooxygenase. Environ. Microbiol. 18(12): 4523-4536. http://dx.doi.org/10.1111/1462-2920.13485, meer Decleyre, H.; Heylen, K.; Sabbe, K.; Tytgat, B.; Deforce, D.; Van Nieuwerburgh, F.; Van Colen, C.; Willems, A. (2015). A doubling of microphytobenthos biomass coincides with a tenfold increase in denitrifier and total bacterial abundances in intertidal sediments of a temperate estuary. PLoS One 10(5): e0126583. http://dx.doi.org/10.1371/journal.pone.0126583, meer Decleyre, H.; Heylen, K.; Van Colen, C.; Willems, A. (2015). Dissimilatory nitrogen reduction in intertidal sediments of a temperate estuary: small scale heterogeneity and novel nitrate-to-ammonium reducers. Front. Microbiol. 6(1124): 13 pp. http://dx.doi.org/10.3389/fmicb.2015.01124, meer Egger, M.; Rasigraf, O.; Sapart, C.J.; Jilbert, T.; Jetten, S.M.; Rockmann, T.; van der Veen, C.; Banda, N.; Kartal, B.; Ettwig, K.F.; Slomp, C.P. (2015). Iron-mediated anaerobic oxidation of methane in brackish coastal sediments. Environ. Sci. Technol. 49(1): 277-283. https://dx.doi.org/10.1021/es503663z, meer Nedashkovskaya, O.; Van Trappen, S.; Zhukova, N.; De Vos, P. (2015). Lutibacter holmesii sp nov., a marine bacterium of the family Flavobacteriaceae isolated from the sea urchin Strongylocentrotus intermedius, and emended description of the genus Lutibacter. Int. J. Syst. Evol. Microbiol. 65: 3991-3996. dx.doi.org/10.1099/ijsem.0.000525, meer Tanaka, R.; Cleenwerck, I.; Mizutani, Y.; Iehata, S.; Shibata, T.; Miyake, H.; Mori, T.; Tamaru, Y.; Ueda, M.; Bossier, P.; Vandamme, P. (2015). Formosa haliotis sp. nov., a brown-alga-degrading bacterium isolated from the gut of the abalone Haliotis gigantea. Int. J. Syst. Evol. Microbiol. 65: 4388-4393. dx.doi.org/10.1099/ijsem.0.000586, meer Vanmaele, S.; Defoirdt, T.; Cleenwerck, I.; De Vos, P.; Bossier, P. (2015). Characterization of the virulence of Harveyi clade vibrios isolated from a shrimp hatchery in vitro and in vivo, in a brine shrimp (Artemia franciscana) model system. Aquaculture 435: 28-32. dx.doi.org/10.1016/j.aquaculture.2014.09.015, meer Yazdani Foshtomi, M.; Braeckman, U.; Derycke, S.; Sapp, M.; Van Gansbeke, D.; Sabbe, K.; Willems, A.; Vincx, M.; Vanaverbeke, J. (2015). The link between microbial diversity and nitrogen cycling in marine sediments is modulated by macrofaunal bioturbation. PLoS One 10(6): e0130116. http://dx.doi.org/10.1371/journal.pone.0130116, meer Figge, J; Cleenwerck, I.; van Uijen, A; De Vos, P.; Huys, G.; Robertson, L (2014). Erratum to "Photobacterium piscicola sp. nov., isolated from marine fish and spoiled packed cod" [Syst. Appl. Microbiol. 37 (5) (2014) 329–335]. Syst. Appl. Microbiol. 37(7): 541-542. dx.doi.org/10.1016/j.syapm.2014.08.003, meer Figge, J; Cleenwerck, I.; van Uijen, A; De Vos, P.; Huys, G.; Robertson, L (2014). Photobacterium piscicola sp nov., isolated from marine fish and spoiled packed cod. Syst. Appl. Microbiol. 37(5): 329-335. https://dx.doi.org/10.1016/j.syapm.2014.05.003, meer Moreira, B; Duytschaever, G; Tonon, C; Froes, M; de Oliveira, S; Amado, M; Francini, B; De Vos, P.; Swings, J.; Thompson, C; Thompson, L (2014). Photobacterium sanctipauli sp. nov. isolated from bleached Madracis decactis (Scleractinia) in the St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil. PeerJ 2: e427. dx.doi.org/10.7717/peerj.427, meer Moreira, B; Duytschaever, G; Tonon, C; Dias, M; Mesquita, M; Cnockaert, M.; Francini, B; De Vos, P.; Thompson, C; Thompson, L (2014). Vibrio madracius sp. nov. isolated from Madracis decactis (Scleractinia) in St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil. Curr. Microbiol. 69(4): 405-411. dx.doi.org/10.1007/s00284-014-0600-1, meer Stock, W.; Heylen, K.; Sabbe, K.; Willems, A.; De Troch, M. (2014). Interactions between benthic copepods, bacteria and diatoms promote nitrogen retention in intertidal marine sediments. 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Book of abstracts – VLIZ Marine Science Day, Online event 3 March 2021. VLIZ Special Publication, 87: pp. 45, meer Gök Duygu, D.; Tahon, G.; Lebbe, L.; Willems, A. (2020). Discovering the unknown: new Antarctic bacterial genus explored, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day. Oostende, Belgium, 18 March 2020. VLIZ Special Publication, 84: pp. 94, meer Deprez, T.; Bossier, P.; Cattrijsse, A.; Chiers, K; De Clerck, O.; Decostere, A.; Deneudt, K.; De Troch, M.; Hernandez, F.; Mascart, T.; Moens, T.; Tkint, T.; Vanstappen, G.; Verstraeten, T.; Willems, A.; Vanreusel, A. (2017). EMBRC.be - The Belgian node of the European Marine Biological Resource Centre, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Marine Scientist Day. Brugge, Belgium, 3 March 2017. VLIZ Special Publication, 79: pp. 28, meer Stock, W.; Willems, A.; Mangelinckx, S.; De Troch, M.; Vyverman, W.; Sabbe, K. (2017). The importance of the little things: bacteria-diatom interactions in intertidal mudflats, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Marine Scientist Day. Brugge, Belgium, 3 March 2017. VLIZ Special Publication, 79: pp. 82, meer Sweetlove, M.; Tytgat, B.; Verleyen, E.; Van den Berge, K.; D'hondt, S.; Obbels, D.; Pinseel, E.; Hodgson, D.A.; Sabbe, K.; Wilmotte, A.; Clement, L.; Willems, A.; Vyverman, W. (2017). Biogeography and macroevolution in the Arctic and Antarctic lacustrine microbiomes, in: Van de Putte, A. (Ed.) Book of Abstracts: XIIth SCAR Biology Symposium, Leuven, Belgium, 10-14 July 2017. pp. 193, meer Tytgat, B.; Verleyen, E.; Sweetlove, M.; Van de Vijver, B.; Van den Berge, K.; D'hondt, S.; Obbels, D.; Pinseel, E.; Hodgson, D.; Imura, S.; Sabbe, K.; Wilmotte, A.; Clement, L.; Willems, A.; The ANTDIAT consortium; Vyverman, W. (2017). Multi-domain evidence for fine-scale bioregionalisation patterns in the Antarctic lacustrine microbiome, in: Van de Putte, A. (Ed.) Book of Abstracts: XIIth SCAR Biology Symposium, Leuven, Belgium, 10-14 July 2017. pp. 194, meer Willems, A.; Tahon, G.; Tytgat, B. (2017). Diversity of phototrophic bacteria in terrestrial samples from the Sør Rondane Mountains, East Antarctica, in: Van de Putte, A. (Ed.) Book of Abstracts: XIIth SCAR Biology Symposium, Leuven, Belgium, 10-14 July 2017. pp. 351, meer Wilmotte, A.; Willems, A.; Verleyen, E.; Vyverman, W.; Velázquez, D.; Quesada, A.; Laughinghouse IV, H.D.; Kleinteich, J.; Pearce, D.A.; Elster, J.; Hughes, K. (2017). A strategy to protect reference sites for future microbiology research in Antarctica, in: Van de Putte, A. (Ed.) Book of Abstracts: XIIth SCAR Biology Symposium, Leuven, Belgium, 10-14 July 2017. pp. 448, meer Wilmotte, A.; Durieu, B.; Lara, Y.; Obbels, D.; Pessi, I.S.; Pinseel, E.; Sweetlove, M.; Tytgat, B.; Van De Putte, A.; Van De Vijver, B.; Verleyen, E.; Vyverman, W.; Willems, A. (2017). Diversity and biogeography of microorganisms in microbial mats of Antarctic lakes, in: Van de Putte, A. (Ed.) Book of Abstracts: XIIth SCAR Biology Symposium, Leuven, Belgium, 10-14 July 2017. pp. 199, meer Deprez, T.; Artois, T.; Bossier, P.; Cattrijsse, A.; Chiers, K.; De Clerck, O.; Decostere, A.; Deneudt, K.; De Troch, M.; Hernandez, F.; Mascart, T.; Moens, T.; Plovie, A.; tkint, T.; Van Stappen, G.; Verstraeten, T.; Willems, A.; Vanreusel, A. (2016). EMBRC.be – The Belgian node of the European Marine Biological Resource Centre, in: Degraer, S. et al. (Ed.) North Sea Open Science Conference 7-10/11/2016. Abstract Booklet. pp. 129, meer Morrissey, K.; Willems, A.; De Clerck, O. (2016). Functional diversity of endosymbiotic bacteria in marine green algae. Poster at the VLIZ Marine Scientist Day 12 February 2016. Phycology Research Group, University of Ghent: Gent. 1 poster pp., meer Sabbe, K.; Stock, W.; De Boever, F.; Koedooder, C.; Choi, P.; Burrick, M.; Mangelinckx, S.; Willems, A.; Vyverman, W. (2016). Diatom-bacteria interactions in marine intertidal biofilms: nature, constraints and specificity, in: Pienitz, R. et al. (Ed.) IDS 2016: 24th International Diatom Symposium, Quebec, Canada, 21-26 August 2016: Program & Abstracts . pp. 128, meer Stock, F.; Vyverman, W.; Mangelinckx, S.; Willems, A.; Vanhaecke, L. (2016). Hello from the other side - Interkingdom crosstalk between bacteria and diatoms, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Marine Scientist Day. Brugge, Belgium, 12 February 2016. VLIZ Special Publication, 75: pp. 106, meer Stock, W.; Grace Bondoc, K.; Vyverman, W.; Pohnert, G.; Willems, A.; Mangelinckx, S. (2016). Diatom-bacteria interactions: symbiosis on the move, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Marine Scientist Day. Brugge, Belgium, 12 February 2016. VLIZ Special Publication, 75: pp. 107, meer Stock, W.; Bondoc, K.G.; Vyverman, W.; Pohnert, G.; Willems, A.; Mangelinckx, S.; De Troch, M.; Sabbe, K. (2016). Diatom-bacteria interactions: symbiosis on the move. Poster at the VLIZ Marine Scientist Day 12 February 2016. Protistology and Aquatic Ecology, Ghent University: Gent. 1 poster pp., meer Vekeman, B. (2016). Methanotrophic microbiomes from North Sea sediment. PhD Thesis. Faculty of Sciences, Ghent University: Gent. ISBN 978-94-6197-399-3. 209 pp., meer Yazdani Foshtomi, M.; Braeckman, U.; Derycke, S.; Leliaert, F.; Willems, A.; Vincx, M.; Vanaverbeke, J. (2016). The interaction between macro and micro-organisms affects biogeochemical cycles in coastal sediments, in: Degraer, S. et al. (Ed.) North Sea Open Science Conference 7-10/11/2016. Abstract Booklet. pp. 38, meer Heylen, K.; Decleyre, H.; Sabbe, K.; Tytgat, B.; Van Colen, C.; Willems, A. (2015). Microphytobenthos increases denitrifier and total bacterial abundances in intertidal sediments of a temperate estuary, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Young Scientists’ Day. Brugge, Belgium, 20 February 2015. VLIZ Special Publication, 71: pp. 73, meer Stock, W.; De Boever, F.; Willems, A.; Mangelinckx, S.; De Troch, M.; Vyverman, W.; Sabbe, K. (2015). Favouritism and secret crosstalk in diatom-bacteria relations, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Young Scientists’ Day. Brugge, Belgium, 20 February 2015. VLIZ Special Publication, 71: pp. 125, meer Vekeman, B.; Wille, J.; Boon, N.; De Vos, P.; Heylen, K. (2015). Exploring the diversity of methane-oxidizing bacteria in marine ecosystems, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Young Scientists’ Day. Brugge, Belgium, 20 February 2015. VLIZ Special Publication, 71: pp. 146, meer Yazdani, M.; Braeckman, U.; Derycke, S.; Sapp, M.; Willems, A.; Vincx, M.; Vanaverbeke, J. (2015). Effect of natural populations of the ecosystem engineering polychaete, Lanice conchilega, on abundance and diversity of nitrifying and denitrifying organisms, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Young Scientists’ Day. Brugge, Belgium, 20 February 2015. VLIZ Special Publication, 71: pp. 150, meer Stock, W. (2014). Het belang van de vergeten schakel: copepoden beïnvloeden de stikstofcyclus, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Young Scientists’ Day. Brugge, Belgium, 7 March 2014. VLIZ Special Publication, 67: pp. 150-151, meer Stock, W.; Heylen, K.; Sabbe, K.; Willems, A.; De Troch, M. (2014). Copepods promote nitrogen retention in estuarine sediments: Complex interactions across the oxic-anoxic interface. Poster at the VLIZ Young Scientist's Day 7 March 2014. Ghent University, Marine Biology Section/Ghent University, Laboratory of Microbiology: Gent. 1 poster pp., meer Stock, W.; Heylen, K.; Sabbe, K.; Willems, A.; De Troch, M. (2014). Copepods promote nitrogen retention in estuarine sediments, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Young Scientists’ Day. Brugge, Belgium, 7 March 2014. VLIZ Special Publication, 67: pp. 101, meer Yazdani, M.; Braeckman, U.; Derycke, S.; Sapp, M.; Willems, A.; Vincx, M.; Vanaverbeke, J. (2014). Direct and indirect effects of macrofaunal functional diversity and bacterial and archaeal community characteristics determine benthic nitrogen cycling in coastal marine sediments, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Young Scientists’ Day. Brugge, Belgium, 7 March 2014. VLIZ Special Publication, 67: pp. 132, meer Verleyen, E.; Obbels, D.; De Wever, A.; Souffreau, C.; Vanormelingen, P.; Sabbe, K.; Vyverman, W.; Peeters, K.; Tytgat, B.; Willems, A.; Ertz, D.; Van de Vijver, B.; Mano, M.-J.; De Carvalho Maalouf, P.; Fernandez-Carazo, R.; Namsaraev, Z.; Wilmotte, A. (2013). Uit het oog, uit het hart? Antarctische microbiële diversiteit als criterium voor natuurbehoud. Sci. connect. (Ned. ed.) 41: 44-47, meer Yazdani, M.; Braeckman, U.; Derycke, S.; Sapp, M.; Willems, A.; Vincx, M.; Vanaverbeke, J. (2013). The effect of macrofaunal functional diversity on density and diversity of nitrifying and denitrifying organisms, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Young Marine Scientists' Day. Brugge, Belgium, 15 February 2013. VLIZ Special Publication, 63: pp. 112, meer Yazdani, M.; Braeckman, U.; Derycke, S.; Sapp, M.; Willems, A.; Vincx, M.; Vanaverbeke, J. (2012). Linking microbial and macrofaunal diversity with benthic ecosystem functioning of the Belgium parts of the North Sea, in: Mees, J. et al. (Ed.) Book of abstracts - VLIZ Young Marine Scientists' Day. Brugge, Belgium, 24 February 2012. VLIZ Special Publication, 55: pp. 112-113, meer Yazdani, M.; Braeckman, U.; Derycke, S.; Sapp, M.; Willems, A.; Vincx, M.; Vanaverbeke, J. (2012). Linking microbial and macrofaunal diversity with benthic ecosystem functioning of the Belgium parts of the North Sea. Ghent University, Marine Biology Research Group: Gent. 1 poster pp., meer De Mesel, I.G.; Derycke, S.; Swings, J.; Vincx, M.; Moens, T. (2003). Influence of bacterivorous nematodes on the decomposition of cordgrass, in: De Mesel, I.G. (2004). Nematoden geassocieerd met fytodetritus in schorren: kolonisatiepatronen en soort- en diversiteitsafhankelijke invloed op afbraakprocessen = Nematodes associated with phytodetritus in salt marshes: colonization patterns and species- and diversity related impacts on decomposition processes. pp. 10-29, meer Vandenberghe, J.; Thompson, F.L.; Gomez-Gil, B.; Swings, J. (2003). Phenotypic diversity amongst Vibrio isolates from marine aquaculture systems, in: Thompson, F.L. Improved taxonomy of the family Vibrionaceae. pp. 39-50, meer

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Projecten (15)

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AMBIO: Antarctische microbiële biodiversiteit: het belang van geografische en ecologische factoren, meer BeRMS: Belgisch register van mariene en kustsoorten, meer Biodegradeerbaarheid van bioplastics,; prenormatief onderzoek, biorecyclage en ecologische impact, meer Diagnose en beheersing van bakterieziekten in penaeide garnalen ontluikingsbedrijven, meer EMBRC: European Marine Biological Resource Centre - Belgium, meer Endosymbiotische bacteriën in coenocytische groenwieren. Verkenning van een partnerschap., meer Het ontwikkelen van publieke cultuurverzamelingen van diatomeeën, polaire cyanobacteriën en mycobacteriën in België, meer Hygiene bewaking en ziektevoorkoming in mariene viskultuur, vnl. door aanpassing en beheersing van de mikrobiologische omgeving, meer Improvement of scallop (Mollusca) production in rural areas, meer Kwantificering en management van de microbiële diversiteit in ecosystemen, meer Larvicultuur van de tarbot (Scophthalmus maximus): Zoötechnische, pathologische en microbiologische aspecten, meer Marine@Ugent: UGent Marine Sciences Center of Excellence, meer Micromat: Biodiversiteit van microbiële matten in Antarctica, meer Prokaryotische diversiteit in poolzeeën en Antarctische meren, meer Taxonomisch, fylogenetisch en biogeografisch onderzoek over Plantae, Fungi en Protoctista, meer

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